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LOC105375084 uncharacterized LOC105375084 [ Homo sapiens (human) ]

Gene ID: 105375084, updated on 27-Aug-2024

Summary

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Gene symbol
LOC105375084
Gene description
uncharacterized LOC105375084
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
6p12.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (50797933..50802848)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901479 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:50533627-50533787 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:50674460-50674961 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:50675081-50675582 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:50675583-50676082 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:50682973-50683503 Neighboring gene VISTA enhancer hs865 Neighboring gene Sharpr-MPRA regulatory region 1859 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:50691426-50692118 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:50692119-50692809 Neighboring gene transcription factor AP-2 delta Neighboring gene MPRA-validated peak5845 silencer Neighboring gene uncharacterized LOC124901490 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:50791385-50791912 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:50791978-50792107 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:50793064-50793564 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:50793565-50794065 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:50810267-50810772 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:50816733-50817234 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:50817235-50817734 Neighboring gene transcription factor AP-2 beta Neighboring gene ribosomal protein S17 pseudogene 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000006.12 Chromosome 6 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    50797933..50802848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_926867.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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