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LOC105375091 uncharacterized LOC105375091 [ Homo sapiens (human) ]

Gene ID: 105375091, updated on 27-Aug-2024

Summary

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Gene symbol
LOC105375091
Gene description
uncharacterized LOC105375091
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in adrenal (RPKM 1.1), skin (RPKM 0.8) and 7 other tissues See more
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Genomic context

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Location:
6p12.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (52870993..52905754)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (52710968..52745276)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92147 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92148 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92149 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92150 Neighboring gene glutathione S-transferase alpha 5 Neighboring gene glutathione S-transferase alpha 11, pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92153 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:52734542-52734752 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92154 Neighboring gene glutathione S-transferase alpha 10, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:52774000-52774692 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:52774693-52775386 Neighboring gene glutathione S-transferase alpha 3 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:52787535-52788194 Neighboring gene Sharpr-MPRA regulatory region 1037 Neighboring gene glutathione S-transferase alpha 9, pseudogene Neighboring gene MPRA-validated peak5857 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:52841001-52841876 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:52841877-52842750 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92160 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:52860003-52860234 Neighboring gene glutathione S-transferase alpha 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    52870993..52905754
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001744165.2 RNA Sequence

  2. XR_001744160.2 RNA Sequence

  3. XR_926877.2 RNA Sequence

  4. XR_001744159.2 RNA Sequence

  5. XR_001744164.2 RNA Sequence

  6. XR_001744161.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    52710968..52745276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076840.1 RNA Sequence

  2. XR_007076836.1 RNA Sequence

  3. XR_007076838.1 RNA Sequence

  4. XR_007076835.1 RNA Sequence

  5. XR_007076839.1 RNA Sequence

  6. XR_007076837.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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