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LOC105375549 uncharacterized LOC105375549 [ Homo sapiens (human) ]

Gene ID: 105375549, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105375549
Gene description
uncharacterized LOC105375549
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105375549 in Genome Data Viewer
Location:
7q35
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (143885451..143901953)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (145165851..145182316)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 115, member C pseudogene Neighboring gene TRPM8 channel associated factor 2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18726 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18727 Neighboring gene uncharacterized LOC112267988 Neighboring gene TRPM8 channel associated factor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26794 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26795 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:143598237-143598774 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18728 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:143602842-143603342 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:143603883-143604439 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:143632675-143633174 Neighboring gene olfactory receptor family 2 subfamily F member 2 Neighboring gene olfactory receptor family 2 subfamily F member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    143885451..143901953
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007060574.1 RNA Sequence

  2. XR_002956526.2 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654714.1 Reference GRCh38.p14 PATCHES

    Range
    429687..446185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069066.1 RNA Sequence

  2. XR_007069067.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    145165851..145182316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077977.1 RNA Sequence

  2. XR_007077978.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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