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LOC105376496 uncharacterized LOC105376496 [ Homo sapiens (human) ]

Gene ID: 105376496, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105376496
Gene description
uncharacterized LOC105376496
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105376496 in Genome Data Viewer
Location:
10p11.21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (36917276..36943132, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (36949119..36975286, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA40 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:36737868-36738406 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:36738407-36738945 Neighboring gene NANOG hESC enhancer GRCh37_chr10:36772950-36773451 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:36782803-36784002 Neighboring gene nicotinamide phosphoribosyltransferase pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:37014374-37014889 Neighboring gene VISTA enhancer hs1334 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:37079549-37080050 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:37080051-37080550 Neighboring gene MAP kinase interacting serine/threonine kinase 2 pseudogene 1 Neighboring gene ARF like GTPase 6 interacting protein 1 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    36917276..36943132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_930823.1 RNA Sequence

  2. XR_930824.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    36949119..36975286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080826.1 RNA Sequence

  2. XR_007080827.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
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Research Materials