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LOC105377615 uncharacterized LOC105377615 [ Homo sapiens (human) ]

Gene ID: 105377615, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105377615
Gene description
uncharacterized LOC105377615
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 4.3) See more
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Genomic context

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See LOC105377615 in Genome Data Viewer
Location:
4q35.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (189550782..189552089)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (192907480..192908602)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377614 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:190400698-190401256 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:190405217-190405972 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:190405973-190406728 Neighboring gene heat shock protein 90 alpha family class A member 4, pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190471799-190472998 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:190523074-190524273 Neighboring gene long intergenic non-protein coding RNA 1262 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190606699-190607898 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190608412-190609611 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190615457-190616656 Neighboring gene uncharacterized LOC105377616 Neighboring gene RNA, U1 small nuclear 51, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    189550782..189552089
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_939635.2 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

  1. NT_187679.1 Reference GRCh38.p14 ALT_REF_LOCI_3

    Range
    189004..190179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_952726.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    192907480..192908602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075292.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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