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LOC105378085 uncharacterized LOC105378085 [ Homo sapiens (human) ]

Gene ID: 105378085, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378085
Gene description
uncharacterized LOC105378085
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378085 in Genome Data Viewer
Location:
6q25.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (159586953..159595632, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (160832572..160841272, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929142 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:159914293-159914495 Neighboring gene ribosomal protein L21 pseudogene 69 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:160015262-160016461 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:160023547-160024063 Neighboring gene uncharacterized LOC124901450 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:160108349-160108599 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25388 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17751 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17752 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:160115306-160115475 Neighboring gene superoxide dismutase 2 Neighboring gene heterogeneous nuclear ribonucleoprotein H1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • FLJ27255

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    159586953..159595632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_943179.3 RNA Sequence

  2. XR_001744434.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    160832572..160841272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077267.1 RNA Sequence

  2. XR_007077266.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207501.1: Suppressed sequence

    Description
    NM_207501.1: This RefSeq was permanently suppressed because there is no support for the protein and it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein
Heading Accession and Version

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