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LOC105378316 uncharacterized LOC105378316 [ Homo sapiens (human) ]

Gene ID: 105378316, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105378316
Gene description
uncharacterized LOC105378316
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378316 in Genome Data Viewer
Location:
10q21.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (58433926..58503479)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (59288050..59357663)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:60094430-60094930 Neighboring gene ubiquitin conjugating enzyme E2 D1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3385 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:60144914-60145570 Neighboring gene transcription factor A, mitochondrial Neighboring gene ReSE screen-validated silencer GRCh37_chr10:60207389-60207551 Neighboring gene uncharacterized LOC124902427 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2380 Neighboring gene BicC family RNA binding protein 1 Neighboring gene family with sequence similarity 133, member A pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    58433926..58503479
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_945981.3 RNA Sequence

  2. XR_945983.3 RNA Sequence

  3. XR_945982.3 RNA Sequence

  4. XR_945984.3 RNA Sequence

  5. XR_007062374.1 RNA Sequence

  6. XR_945985.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    59288050..59357663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081089.1 RNA Sequence

  2. XR_007081090.1 RNA Sequence

  3. XR_007081088.1 RNA Sequence

  4. XR_007081091.1 RNA Sequence

  5. XR_007081093.1 RNA Sequence

  6. XR_007081092.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials