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LOC105379222 uncharacterized LOC105379222 [ Homo sapiens (human) ]

Gene ID: 105379222, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105379222
Gene description
uncharacterized LOC105379222
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105379222 in Genome Data Viewer
Location:
8p23.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (8389564..8399326)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (11344111..11354036, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8093271-8093782 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8094341-8094892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8094893-8095443 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26963 Neighboring gene family with sequence similarity 86, member A pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:8101423-8102622 Neighboring gene ALG1 like 13, pseudogene Neighboring gene Sharpr-MPRA regulatory region 6714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26964 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26965 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18893 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8145864-8146364 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:8153089-8154288 Neighboring gene uncharacterized LOC124901879 Neighboring gene PEAK1 related, kinase-activating pseudokinase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26966 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:8219633-8220832 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8233601-8234540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8238570-8239092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8239093-8239613 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18895 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:8256091-8256704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8269459-8270166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8270167-8270872 Neighboring gene long intergenic non-protein coding RNA 2949 Neighboring gene uncharacterized LOC107986913 Neighboring gene Sharpr-MPRA regulatory region 2598 Neighboring gene long intergenic non-protein coding RNA 2950

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    8389564..8399326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002956679.2 RNA Sequence

  2. XR_002956678.2 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    4948379..4958286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_948922.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    11344111..11354036 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078719.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials