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Eaf2 ELL associated factor 2 [ Mus musculus (house mouse) ]

Gene ID: 106389, updated on 9-Dec-2024

Summary

Official Symbol
Eaf2provided by MGI
Official Full Name
ELL associated factor 2provided by MGI
Primary source
MGI:MGI:2146616
See related
Ensembl:ENSMUSG00000022838 AllianceGenome:MGI:2146616
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
U19; Festa; Traits; FESTA-L; FESTA-S
Summary
Predicted to enable transcription elongation factor activity. Acts upstream of or within negative regulation of cell growth; negative regulation of epithelial cell proliferation involved in prostate gland development; and positive regulation of DNA-templated transcription. Located in nucleoplasm. Is expressed in several structures, including genitourinary system; integumental system; nervous system; sensory organ; and tooth. Orthologous to human EAF2 (ELL associated factor 2). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Broad expression in bladder adult (RPKM 1.1), kidney adult (RPKM 1.0) and 24 other tissues See more
Orthologs
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Genomic context

See Eaf2 in Genome Data Viewer
Location:
16 B3; 16 26.05 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (36613246..36695275, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (36792884..36875068, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_40773 Neighboring gene RNA guanylyltransferase and 5'-phosphatase pseudogene Neighboring gene solute carrier family 15 (H+/peptide transporter), member 2 Neighboring gene STARR-seq mESC enhancer starr_40774 Neighboring gene 60S ribosomal protein L7a pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E764 Neighboring gene STARR-positive B cell enhancer ABC_E1185 Neighboring gene STARR-positive B cell enhancer ABC_E10903 Neighboring gene IQ calmodulin-binding motif containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E5541 Neighboring gene STARR-positive B cell enhancer ABC_E99 Neighboring gene RIKEN cDNA 4930565N06 gene Neighboring gene STARR-positive B cell enhancer mm9_chr16:36884785-36885086 Neighboring gene golgin B1 Neighboring gene STARR-seq mESC enhancer starr_40776 Neighboring gene STARR-positive B cell enhancer ABC_E8632 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:36932162-36932315 Neighboring gene STARR-positive B cell enhancer ABC_E7446 Neighboring gene STARR-positive B cell enhancer ABC_E4169 Neighboring gene hematopoietic cell specific Lyn substrate 1

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (1)  1 citation

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables transcription elongation factor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables transcription elongation factor activity IEA
Inferred from Electronic Annotation
more info
 
enables transcription elongation factor activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
PubMed 
part_of super elongation complex IEA
Inferred from Electronic Annotation
more info
 
part_of transcription elongation factor complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of transcription elongation factor complex ISO
Inferred from Sequence Orthology
more info
 
part_of transcription elongation factor complex ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
ELL-associated factor 2
Names
ehrlich S-II transcriptional activator factor
testosterone regulated apoptosis inducer and tumor suppressor
testosterone-regulated apoptosis inducer and tumor suppressor protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113401.1NP_001106872.1  ELL-associated factor 2 isoform b

    See identical proteins and their annotated locations for NP_001106872.1

    Status: VALIDATED

    Source sequence(s)
    AC117662, AY034479, BG144504
    Consensus CDS
    CCDS49843.1
    UniProtKB/Swiss-Prot
    Q7TN80, Q91ZD6, Q99KD2
    Related
    ENSMUSP00000110477.3, ENSMUST00000114829.9
    Conserved Domains (1) summary
    pfam09816
    Location:17113
    EAF; RNA polymerase II transcription elongation factor
  2. NM_001113405.1NP_001106876.1  ELL-associated factor 2 isoform a

    See identical proteins and their annotated locations for NP_001106876.1

    Status: VALIDATED

    Source sequence(s)
    AB081298, AC117662, AY049021
    Consensus CDS
    CCDS37335.1
    UniProtKB/Swiss-Prot
    Q91ZD6
    Related
    ENSMUSP00000110473.2, ENSMUST00000114825.3
  3. NM_001358102.1NP_001345031.1  ELL-associated factor 2 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC117662, AC154232
    Consensus CDS
    CCDS37335.1
  4. NM_134111.2NP_598872.1  ELL-associated factor 2 isoform a

    See identical proteins and their annotated locations for NP_598872.1

    Status: VALIDATED

    Source sequence(s)
    BC056626
    Consensus CDS
    CCDS37335.1
    UniProtKB/Swiss-Prot
    Q91ZD6
    Related
    ENSMUSP00000075331.6, ENSMUST00000075946.12

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    36613246..36695275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006521685.5XP_006521748.1  ELL-associated factor 2 isoform X3

    See identical proteins and their annotated locations for XP_006521748.1

    UniProtKB/Swiss-Prot
    Q91ZD6
  2. XM_036159730.1XP_036015623.1  ELL-associated factor 2 isoform X3

  3. XM_006521682.4XP_006521745.1  ELL-associated factor 2 isoform X1

    See identical proteins and their annotated locations for XP_006521745.1

    UniProtKB/TrEMBL
    K4DI60
    Related
    ENSMUSP00000023537.6, ENSMUST00000023537.6
    Conserved Domains (1) summary
    pfam09816
    Location:17115
    EAF; RNA polymerase II transcription elongation factor
  4. XM_036159731.1XP_036015624.1  ELL-associated factor 2 isoform X3

  5. XM_006521683.1XP_006521746.1  ELL-associated factor 2 isoform X3

    See identical proteins and their annotated locations for XP_006521746.1

    UniProtKB/Swiss-Prot
    Q91ZD6
  6. XM_011245800.3XP_011244102.1  ELL-associated factor 2 isoform X2

    See identical proteins and their annotated locations for XP_011244102.1

    Conserved Domains (1) summary
    pfam09816
    Location:17115
    EAF; RNA polymerase II transcription elongation factor

RNA

  1. XR_003951743.2 RNA Sequence