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RN7SKP69 RN7SK pseudogene 69 [ Homo sapiens (human) ]

Gene ID: 106480461, updated on 17-Sep-2024

Summary

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Official Symbol
RN7SKP69provided by HGNC
Official Full Name
RN7SK pseudogene 69provided by HGNC
Primary source
HGNC:HGNC:45793
See related
AllianceGenome:HGNC:45793
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RN7SKP69 in Genome Data Viewer
Location:
20p12.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (17576280..17576509, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (17626936..17627165, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (17556925..17557154, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene proprotein convertase subtilisin/kexin type 2 Neighboring gene dynein light chain Tctex-type 3 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:17485157-17485680 Neighboring gene hESC enhancers GRCh37_chr20:17511284-17511824 and GRCh37_chr20:17511825-17512364 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17564 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12688 Neighboring gene beaded filament structural protein 1 Neighboring gene MPRA-validated peak4154 silencer Neighboring gene RPS27A pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:17537881-17538596 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:17549683-17550250 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12689 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12690 Neighboring gene ras homolog family member G pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr20:17583143-17583644 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:17592387-17593110 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:17594559-17595282 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:17595283-17596006 Neighboring gene destrin, actin depolymerizing factor Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:17616513-17617386 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:17617387-17618260 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12691 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17565 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:17629025-17629728 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12693 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12694 Neighboring gene Sharpr-MPRA regulatory region 8855 Neighboring gene ribosome binding protein 1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:17660181-17661380 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:17661572-17662244 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12697 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12698

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • RNA, 7SK small nuclear pseudogene 69

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043540.1 

    Range
    101..330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    17576280..17576509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    17626936..17627165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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