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MTCO1P42 MT-CO1 pseudogene 42 [ Homo sapiens (human) ]

Gene ID: 107075283, updated on 17-Sep-2024

Summary

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Official Symbol
MTCO1P42provided by HGNC
Official Full Name
MT-CO1 pseudogene 42provided by HGNC
Primary source
HGNC:HGNC:52107
See related
Ensembl:ENSG00000230327 AllianceGenome:HGNC:52107
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2p16.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (50588690..50589415, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (50584802..50585527, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (50815828..50816553, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124906005 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:49999711-50000210 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:50163910-50164578 Neighboring gene VISTA enhancer hs2343 Neighboring gene ribosomal protein L7 pseudogene 13 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:50231574-50232307 Neighboring gene neurexin 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:50311271-50311784 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:50311785-50312297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:50572921-50573860 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:50573861-50574798 Neighboring gene MPRA-validated peak3699 silencer Neighboring gene VISTA enhancer hs1348 Neighboring gene uncharacterized LOC101927089 Neighboring gene microRNA 8485

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • mitochondrially encoded cytochrome c oxidase I pseudogene 42

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_046432.1 

    Range
    101..826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    50588690..50589415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    50584802..50585527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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