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LOC107275376 probable serine/threonine-protein kinase PBL1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107275376, updated on 10-Oct-2024

Summary

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Gene symbol
LOC107275376
Gene description
probable serine/threonine-protein kinase PBL1
Locus tag
OSNPB_040109400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC107275376 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (564169..566001)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (560485..562482)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable L-type lectin-domain containing receptor kinase S.5 Neighboring gene probable L-type lectin-domain containing receptor kinase S.5 Neighboring gene uncharacterized LOC4334923 Neighboring gene probable glycosyltransferase At5g25310

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable serine/threonine-protein kinase PBL1
Names
L-type lectin-domain containing receptor kinase IV.2
Os04g0109400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    564169..566001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015779177.2 → XP_015634663.2  probable serine/threonine-protein kinase PBL1

    UniProtKB/TrEMBL
    B8AU95
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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