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LOC107275709 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107275709, updated on 1-Aug-2024

Summary

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Gene symbol
LOC107275709
Gene description
protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
Locus tag
OSNPB_010141300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0019D06.2
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2233918..2237283, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2226207..2229871, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene AP2/ERF and B3 domain-containing protein Os01g0141000-like Neighboring gene protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 Neighboring gene protein root UVB sensitive 5 Neighboring gene DNA damage-binding protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
Names
Os01g0141300
putative p60 katanin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    2233918..2237283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309290.1 → XP_066165387.1  protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X3

    UniProtKB/TrEMBL
    A2WKI0

  2. XM_015786999.3 → XP_015642485.1  protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X2

    UniProtKB/TrEMBL
    A0A0N7KCB1, A2WKI0, B9EZF4, Q5ZEN9
    Conserved Domains (6) summary
    smart00382
    Location:141 → 277
    AAA; ATPases associated with a variety of cellular activities
    COG1484
    Location:34 → 210
    DnaC; DNA replication protein DnaC [Replication, recombination and repair]
    cd02678
    Location:4 → 74
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
    pfam00004
    Location:146 → 275
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:345 → 408
    Vps4_C; Vps4 C terminal oligomerization domain
    cl21455
    Location:108 → 164
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_066309286.1 → XP_066165383.1  protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X1

    UniProtKB/TrEMBL
    A2WKI0
Nucleotide Protein
Heading Accession and Version

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