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LOC107276358 ETHYLENE INSENSITIVE 3-like 1 protein [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107276358, updated on 16-Jul-2024

Summary

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Gene symbol
LOC107276358
Gene description
ETHYLENE INSENSITIVE 3-like 1 protein
Locus tag
OSNPB_030324300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
EIL1; MHZ6; EIL1A; OsEIL1; OsEIL1a; OsJ_10672
Expression
Ubiquitous expression in leaves after flowering (RPKM 262.2), roots after flowering (RPKM 251.5) and 6 other tissues See more
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Genomic context

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See LOC107276358 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (11828853..11833079)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11774217..11778364)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene non-specific lipid transfer protein GPI-anchored 2 Neighboring gene ETHYLENE INSENSITIVE 3-like 1 protein Neighboring gene putative disease resistance protein RGA4 Neighboring gene probable arabinosyltransferase ARAD1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The activation of OsEIL1 on YUC8 transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development. Qin H, et al. PLoS Genet, 2017 Aug. PMID 28829777, Free PMC Article
  2. OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component. Mao C, et al. Plant Mol Biol, 2006 May. PMID 16786297
  3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein ETHYLENE-INSENSITIVE 3-like 1a
Names
EIN3-like protein 1
EIN3-like protein 1a
LOC_Os03g20790
Protein ETHYLENE-INSENSITIVE 3-like 1a
Protein MAO HUZI 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001405177.1 → NP_001392106.1  protein ETHYLENE-INSENSITIVE 3-like 1a

    Status: VALIDATED

    Source sequence(s)
    AK098987, AK101076, CB645953, CI181741
    UniProtKB/Swiss-Prot
    Q0DS96, Q10M41, Q3Y6P4
    UniProtKB/TrEMBL
    A2XG63

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    11828853..11833079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q10M41.1 GenPept UniProtKB/Swiss-Prot:Q10M41

Gene LinkOut

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Molecular Biology Databases