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LOC107276727 GDSL esterase/lipase At5g55050 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107276727, updated on 12-Jul-2024

Summary

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Gene symbol
LOC107276727
Gene description
GDSL esterase/lipase At5g55050
Locus tag
OSNPB_020668900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0684A08.7; OJ1725_H08.21
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Genomic context

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See LOC107276727 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27643034..27644426, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27156221..27158333, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330262 Neighboring gene uncharacterized LOC4330263 Neighboring gene GDSL esterase/lipase At5g55050 Neighboring gene dehydrin DHN1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDSL esterase/lipase At5g55050
Names
Os02g0668900
putative anter-specific proline-rich protein APG

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    27643034..27644426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768768.3 → XP_015624254.1  GDSL esterase/lipase At5g55050

    UniProtKB/TrEMBL
    A3A9Z1, Q6ESR6
    Conserved Domains (1) summary
    cd01837
    Location:27 → 348
    SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
Nucleotide Protein
Heading Accession and Version

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