U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107277960 uncharacterized LOC107277960 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107277960, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107277960
Gene description
uncharacterized LOC107277960
Gene type
ncRNA
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107277960 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (24664834..24667373)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24168402..24170969)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene BAG family molecular chaperone regulator 1 Neighboring gene uncharacterized membrane protein At3g27390 Neighboring gene uncharacterized LOC4336201 Neighboring gene very-long-chain 3-oxoacyl-CoA reductase 1 Neighboring gene uncharacterized LOC4336203

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    24664834..24667373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001545215.3 RNA Sequence

  2. XR_003242038.2 RNA Sequence

  3. XR_001545216.3 RNA Sequence

  4. XR_010740711.1 RNA Sequence

  5. XR_003242039.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version