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LOC107279115 short-chain dehydrogenase TIC 32, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107279115, updated on 12-Jul-2024

Summary

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Gene symbol
LOC107279115
Gene description
short-chain dehydrogenase TIC 32, chloroplastic-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107279115 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22116542..22124280, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21423069..21432184, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At1g08160 Neighboring gene silicon efflux transporter LSI3-like Neighboring gene uncharacterized LOC136353649 Neighboring gene short-chain dehydrogenase TIC 32, chloroplastic Neighboring gene short-chain dehydrogenase TIC 32, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
short-chain dehydrogenase TIC 32, chloroplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    22116542..22124280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066304733.1 → XP_066160830.1  short-chain dehydrogenase TIC 32, chloroplastic-like isoform X2

  2. XM_026020721.2 → XP_025876506.1  short-chain dehydrogenase TIC 32, chloroplastic-like isoform X1

    Conserved Domains (1) summary
    cd05327
    Location:29 → 309
    retinol-DH_like_SDR_c_like; retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs
Nucleotide Protein
Heading Accession and Version

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