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LOC107280218 uncharacterized LOC107280218 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107280218, updated on 12-Jul-2024

Summary

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Gene symbol
LOC107280218
Gene description
uncharacterized LOC107280218
Gene type
ncRNA
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 6.1), flowers (RPKM 5.3) and 6 other tissues See more
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Genomic context

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See LOC107280218 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (23733258..23736413, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (22873831..22877055, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene WD40 repeat-containing protein HOS15 Neighboring gene uncharacterized LOC4333425 Neighboring gene uncharacterized LOC136355869 Neighboring gene uncharacterized LOC4333426 Neighboring gene protein ALP1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    23733258..23736413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_010740411.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version