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LOC107280682 uncharacterized LOC107280682 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107280682, updated on 12-Jul-2024

Summary

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Gene symbol
LOC107280682
Gene description
uncharacterized LOC107280682
Gene type
ncRNA
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 1.1), roots after flowering (RPKM 0.4) and 6 other tissues See more
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Genomic context

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See LOC107280682 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22767273..22769459)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22274453..22277087)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene F-box/FBD/LRR-repeat protein At1g13570 Neighboring gene pentatricopeptide repeat-containing protein At1g09900-like Neighboring gene putative lipoxygenase 5 Neighboring gene glutamate decarboxylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    22767273..22769459
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001545229.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version