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LOC107281214 uncharacterized LOC107281214 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107281214, discontinued on 12-Jul-2024
  • This record has been withdrawn by NCBI because the model on which it was based was not predicted in a later annotation.

Summary

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Gene symbol
LOC107281214
Gene description
uncharacterized LOC107281214
Gene type
ncRNA
RefSeq status
WITHDRAWN
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Summary
DISCONTINUED: This record has been withdrawn by NCBI because the model on which it was based was not predicted in a later annotation.
Expression
Broad expression in roots before flowering (RPKM 1.5), leaves after flowering (RPKM 0.8) and 5 other tissues See more
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Genomic context

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See LOC107281214 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
102 latest, but not current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (573080..574044, complement)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 (NOTE: not current)

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

    Range
    573080..574044 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001546563.2 RNA Sequence