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LOC107281450 putative disease resistance protein RGA3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107281450, updated on 1-Aug-2024

Summary

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Gene symbol
LOC107281450
Gene description
putative disease resistance protein RGA3
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 6.8), flower buds (RPKM 6.8) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25808578..25815518, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24946165..24953152, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene putative disease resistance protein At3g14460 Neighboring gene putative disease resistance protein RGA3 Neighboring gene disease resistance protein RGA2 Neighboring gene retrovirus-related Pol polyprotein from transposon TNT 1-94

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to other organism IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative disease resistance protein RGA3
Names
P0040H10.19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    25808578..25815518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066311520.1 → XP_066167617.1  putative disease resistance protein RGA3 isoform X2

    UniProtKB/TrEMBL
    Q69XW4

  2. XM_066311518.1 → XP_066167615.1  putative disease resistance protein RGA3 isoform X2

    UniProtKB/TrEMBL
    Q69XW4

  3. XM_066311521.1 → XP_066167618.1  putative disease resistance protein RGA3 isoform X2

    UniProtKB/TrEMBL
    Q69XW4

  4. XM_066311519.1 → XP_066167616.1  putative disease resistance protein RGA3 isoform X2

    UniProtKB/TrEMBL
    Q69XW4

  5. XM_015788613.3 → XP_015644099.1  putative disease resistance protein RGA3 isoform X1

    UniProtKB/TrEMBL
    Q69XW4
    Conserved Domains (3) summary
    cd09293
    Location:1050 → 1188
    AMN1; Antagonist of mitotic exit network protein 1
    sd00033
    Location:999 → 1022
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00931
    Location:205 → 512
    NB-ARC; NB-ARC domain
Nucleotide Protein
Heading Accession and Version

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