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RNU1-116P RNA, U1 small nuclear 116, pseudogene [ Homo sapiens (human) ]

Gene ID: 107521946, updated on 17-Jun-2024

Summary

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Official Symbol
RNU1-116Pprovided by HGNC
Official Full Name
RNA, U1 small nuclear 116, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48458
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Annotation information
Annotation category: only annotated on alternate loci in reference assembly
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Genomic context

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See RNU1-116P in Genome Data Viewer
Location:
6p21.3 alternate reference locus
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 (ALT_REF_LOCI_2) NT_113891.3 (3995582..3995728, complement)
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 (ALT_REF_LOCI_6) NT_167248.2 (3776541..3776687, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 Unlocalized Scaffold (ALT_REF_LOCI_2) NT_113891.2 (3995688..3995834, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 Unlocalized Scaffold (ALT_REF_LOCI_6) NT_167248.1 (3782137..3782283, complement)

NT_113891.3Genomic Context describing neighboring genes Neighboring gene major histocompatibility complex, class II, DR beta 3 Neighboring gene major histocompatibility complex, class II, DR beta 2 (pseudogene) Neighboring gene major histocompatibility complex, class II, DR beta 1 Neighboring gene major histocompatibility complex, class II, DQ alpha 1

NT_167248.2Genomic Context describing neighboring genes Neighboring gene major histocompatibility complex, class II, DR beta 3 Neighboring gene major histocompatibility complex, class II, DR beta 2 (pseudogene) Neighboring gene major histocompatibility complex, class II, DR beta 1 Neighboring gene major histocompatibility complex, class II, DQ alpha 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_046843.1 

    Range
    101..247
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_113891.3 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    3995582..3995728 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_6

Genomic

  1. NT_167248.2 Reference GRCh38.p14 ALT_REF_LOCI_6

    Range
    3776541..3776687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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