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LOC107984268 uncharacterized LOC107984268 [ Homo sapiens (human) ]

Gene ID: 107984268, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984268
Gene description
uncharacterized LOC107984268
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984268 in Genome Data Viewer
Location:
10q25.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (112028343..112060249, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (112919357..112951263, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr10:113265858-113266649 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:113297943-113299142 Neighboring gene ribosomal protein S6 pseudogene 15 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4061 Neighboring gene NANOG hESC enhancer GRCh37_chr10:113597616-113598117 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:113758480-113758994 Neighboring gene uncharacterized LOC124902501 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:113821951-113822500 Neighboring gene MPRA-validated peak1087 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:113863635-113864136 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:113864137-113864636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:113899789-113900288 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2831 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4062 Neighboring gene glycerol-3-phosphate acyltransferase, mitochondrial Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:113999878-114000378 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:114048161-114048789 Neighboring gene microRNA 6715b Neighboring gene microRNA 6715a Neighboring gene tectorin beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    112028343..112060249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001747587.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    112919357..112951263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080864.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases