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LOC107984909 uncharacterized LOC107984909 [ Homo sapiens (human) ]

Gene ID: 107984909, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984909
Gene description
uncharacterized LOC107984909
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984909 in Genome Data Viewer
Location:
1p36.32
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (3187558..3195526)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (2690580..2698562)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene PR/SET domain 16 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3044803-3045728 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3052001-3052522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3052523-3053044 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3054481-3054980 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3062305-3063167 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3066095-3066595 Neighboring gene microRNA 4251 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3070263-3070764 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3070765-3071264 Neighboring gene uncharacterized LOC105378606 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:3080396-3081595 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3105417-3105918 Neighboring gene uncharacterized LOC105378605 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3133830-3134598 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3135420-3135963 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3135964-3136506 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3138135-3138677 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:3138678-3139220 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6702 Neighboring gene Sharpr-MPRA regulatory region 1148 Neighboring gene collagen alpha-5(IV) chain-like Neighboring gene VISTA enhancer hs705 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:3191818-3193017 Neighboring gene Sharpr-MPRA regulatory region 1987 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3212462-3212962

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    3187558..3195526
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001737869.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    2690580..2698562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069797.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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