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LOC107984911 uncharacterized LOC107984911 [ Homo sapiens (human) ]

Gene ID: 107984911, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984911
Gene description
uncharacterized LOC107984911
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984911 in Genome Data Viewer
Location:
1p36.31
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (5470329..5481317, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (4992725..5003715, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376682 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5203113-5203613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5217254-5217754 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5285469-5286066 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5286067-5286664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5371655-5372156 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:5408560-5409759 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:5448514-5449713 Neighboring gene Sharpr-MPRA regulatory region 1516 Neighboring gene uncharacterized LOC124904590 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5487427-5487926 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:5489955-5491154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5510651-5511489 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5511490-5512327 Neighboring gene uncharacterized LOC105376686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5561470-5561970 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5561971-5562471 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5586625-5587537 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:5588144-5588346 Neighboring gene Sharpr-MPRA regulatory region 13064 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5657030-5657678 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5657679-5658325 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5703395-5703966 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5718390-5718890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5718891-5719391 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5727853-5728534 Neighboring gene small nucleolar RNA SNORD66

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    5470329..5481317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001737879.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    4992725..5003715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069814.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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