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LINC02094 long intergenic non-protein coding RNA 2094 [ Homo sapiens (human) ]

Gene ID: 107984995, updated on 10-Dec-2024

Summary

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Official Symbol
LINC02094provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2094provided by HGNC
Primary source
HGNC:HGNC:52945
See related
AllianceGenome:HGNC:52945
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02094 in Genome Data Viewer
Location:
17p11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (19418348..19424357)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (19366376..19372386)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (19321661..19327670)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903947 Neighboring gene ring finger protein 112 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:19336510-19337048 Neighboring gene uncharacterized LOC105371574 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:19344229-19345013 Neighboring gene ribosomal protein S2 pseudogene 46 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19356211-19356712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19356713-19357212 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19361301-19361846 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19361847-19362393 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:19362394-19362939 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:19363487-19364033 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19364034-19364580 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19366221-19366766 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19374315-19374824 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19378419-19379256 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:19384743-19385658 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:19385659-19386572 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:19395941-19396458 Neighboring gene ribosomal protein L17 pseudogene 43

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186796.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004448

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    19418348..19424357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    19366376..19372386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases