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LOC107985260 uncharacterized LOC107985260 [ Homo sapiens (human) ]

Gene ID: 107985260, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985260
Gene description
uncharacterized LOC107985260
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985260 in Genome Data Viewer
Location:
1q32.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (211530783..211544545, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (210776876..210790629, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene actin related protein 2/3 complex subunit 3 pseudogene 2 Neighboring gene RD3 regulator of GUCY2D Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1786 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1787 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2486 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2487 Neighboring gene uncharacterized LOC107985261 Neighboring gene MPRA-validated peak683 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:211711705-211712205 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:211721978-211722385 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1788 Neighboring gene H3K27ac hESC enhancers GRCh37_chr1:211751675-211752176 and GRCh37_chr1:211752177-211752676 Neighboring gene solute carrier family 30 member 1 Neighboring gene uncharacterized LOC105372903

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    211530783..211544545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738448.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    210776876..210790629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071063.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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