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LOC107985478 uncharacterized LOC107985478 [ Homo sapiens (human) ]

Gene ID: 107985478, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985478
Gene description
uncharacterized LOC107985478
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in esophagus (RPKM 1.1), lung (RPKM 0.1) and 1 other tissue See more
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Genomic context

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See LOC107985478 in Genome Data Viewer
Location:
21q22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (41665664..41668279, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (40054735..40057350, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:43024594-43025470 Neighboring gene uncharacterized LOC124905060 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:43025471-43026346 Neighboring gene Sharpr-MPRA regulatory region 1599 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:43032765-43033428 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:43040871-43041391 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:43042456-43043655 Neighboring gene uncharacterized LOC105372812 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:43079701-43080288 Neighboring gene uncharacterized LOC105372813 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18484 Neighboring gene long intergenic non-protein coding RNA 111 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:43105663-43106582

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    41665664..41668279 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001755103.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    40054735..40057350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090189.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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