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LOC107985667 uncharacterized LOC107985667 [ Homo sapiens (human) ]

Gene ID: 107985667, updated on 22-Oct-2024

Summary

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Gene symbol
LOC107985667
Gene description
uncharacterized LOC107985667
See related
Ensembl:ENSG00000297016
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985667 in Genome Data Viewer
Location:
Xq28
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (149470904..149472137, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (147736644..147737877, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene ALF transcription elongation factor 2 Neighboring gene RN7SK pseudogene 267 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30010 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30011 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:148228003-148228504 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:148228505-148229004 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:148264804-148265396 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30012 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30013 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30014 Neighboring gene uncharacterized LOC122319696 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:148517664-148518235 Neighboring gene Sharpr-MPRA regulatory region 6851 Neighboring gene IDS recombination region Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:148585415-148585963 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:148586087-148586588 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30015 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:148591963-148593162 Neighboring gene Sharpr-MPRA regulatory region 15241 Neighboring gene IDSP1 recombination region Neighboring gene iduronate 2-sulfatase Neighboring gene iduronate 2-sulfatase pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    149470904..149472137 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001755972.2 RNA Sequence

    Related
    ENST00000744276.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    147736644..147737877 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007091012.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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