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LOC107986632 uncharacterized LOC107986632 [ Homo sapiens (human) ]

Gene ID: 107986632, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107986632
Gene description
uncharacterized LOC107986632
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in placenta (RPKM 2.4), fat (RPKM 0.3) and 1 other tissue See more
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Genomic context

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See LOC107986632 in Genome Data Viewer
Location:
6q21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (112284524..112299100, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (113468617..113482596, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986633 Neighboring gene laminin subunit alpha 4 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:112462018-112463217 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24961 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:112519925-112520428 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:112520429-112520931 Neighboring gene RNA, U6 small nuclear 1226, pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:112524438-112525637 Neighboring gene NANOG hESC enhancer GRCh37_chr6:112535822-112536323 Neighboring gene LAMA4 antisense RNA 1 Neighboring gene PIN2 (TERF1) interacting telomerase inhibitor 1 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:112649857-112650442 Neighboring gene ret finger protein like 4B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    112284524..112299100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007059712.1 RNA Sequence

  2. XR_001744298.2 RNA Sequence

  3. XR_007059711.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    113468617..113482596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077041.1 RNA Sequence

  2. XR_007077042.1 RNA Sequence

  3. XR_007077040.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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