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LOC107986639 uncharacterized LOC107986639 [ Homo sapiens (human) ]

Gene ID: 107986639, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107986639
Gene description
uncharacterized LOC107986639
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986639 in Genome Data Viewer
Location:
6q22.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (114991429..115002282)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (116174687..116185540)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene lncRNA periodontal mesenchymal stem cell osteogenesis related Neighboring gene NANOG hESC enhancer GRCh37_chr6:114885549-114886071 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:115046932-115047452 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:115047453-115047971 Neighboring gene RNA, U6 small nuclear 475, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24974 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:115322458-115323657 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:115352812-115353362 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:115358194-115358741 Neighboring gene uncharacterized LOC105377960 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:115391597-115392796 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_87752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:115571209-115571710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:115571711-115572210 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:115735940-115736652 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:115736653-115737364 Neighboring gene uncharacterized LOC105377961

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    114991429..115002282
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001744318.2 RNA Sequence

  2. XR_001744317.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    116174687..116185540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077058.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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