U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Apol7c apolipoprotein L 7c [ Mus musculus (house mouse) ]

Gene ID: 108956, updated on 9-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
Apol7cprovided by MGI
Official Full Name
apolipoprotein L 7cprovided by MGI
Primary source
MGI:MGI:1920912
See related
Ensembl:ENSMUSG00000044309 AllianceGenome:MGI:1920912
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2210421G13Rik
Summary
Predicted to enable lipid binding activity. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human APOL2 (apolipoprotein L2). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in large intestine adult (RPKM 17.2), spleen adult (RPKM 13.7) and 8 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Apol7c in Genome Data Viewer
Location:
15 D3; 15 36.4 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (77409052..77417540, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (77524852..77533335, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene apolipoprotein L 10A Neighboring gene apolipoprotein L 11a Neighboring gene STARR-seq mESC enhancer starr_39107 Neighboring gene RIKEN cDNA 1700025B11 gene Neighboring gene apolipoprotein L 10B Neighboring gene STARR-seq mESC enhancer starr_39108

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables lipid binding IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
apolipoprotein L 7c

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175391.4 → NP_780600.1  apolipoprotein L 7c

    See identical proteins and their annotated locations for NP_780600.1

    Status: PROVISIONAL

    Source sequence(s)
    AL591864
    Consensus CDS
    CCDS37127.1
    UniProtKB/TrEMBL
    Q8C6E1
    Related
    ENSMUSP00000050745.6, ENSMUST00000062562.7
    Conserved Domains (1) summary
    pfam05461
    Location:20 → 367
    ApoL; Apolipoprotein L

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    77409052..77417540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006520277.5 → XP_006520340.1  apolipoprotein L 7c isoform X1

    See identical proteins and their annotated locations for XP_006520340.1

    UniProtKB/TrEMBL
    Q8C6E1
    Conserved Domains (1) summary
    pfam05461
    Location:20 → 367
    ApoL; Apolipoprotein L
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous