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esr1 estrogen receptor 1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112157948, updated on 10-Jul-2024

Summary

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Gene symbol
esr1
Gene description
estrogen receptor 1
See related
EnsemblRapid:ENSOMEG00005020933
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Annotation information
Annotation category: partial on reference assembly
Orthologs
zebrafish all
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Genomic context

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See esr1 in Genome Data Viewer
Location:
chromosome: LG24
Exon count:
10
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG24 NC_050535.1 (9517182..9527387)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096095.1 (15198341..15208562, complement)

Linkage Group LG24 - NC_050535.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 2b Neighboring gene acidic residue methyltransferase 1 Neighboring gene spectrin repeat containing, nuclear envelope 1a Neighboring gene uncharacterized LOC112157841 Neighboring gene myc target 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Perfluorooctane sulfonate impairs the cardiac development of a marine medaka (Oryzias melastigma). Huang Q, et al. Aquat Toxicol, 2011 Sep. PMID 21684243
  2. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear estrogen receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in steroid hormone receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
estrogen receptor
Names
estrogen receptor aipha protein
estrogen receptor alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050535.1 Reference ASM292280v2 Primary Assembly

    Range
    9517182..9527387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024291062.2 → XP_024146830.1  estrogen receptor

    UniProtKB/TrEMBL
    A0A0F6MTX1
    Related
    ENSOMEP00005045637.1, ENSOMET00005052421.1
    Conserved Domains (3) summary
    cd07171
    Location:179 → 260
    NR_DBD_ER; DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers
    pfam02159
    Location:46 → 180
    Oest_recep; Oestrogen receptor
    cl11397
    Location:316 → 552
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
Nucleotide Protein Strain
Heading Accession and Version

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