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LOC112268036 uncharacterized LOC112268036 [ Homo sapiens (human) ]

Gene ID: 112268036, updated on 17-Jun-2024

Summary

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Gene symbol
LOC112268036
Gene description
uncharacterized LOC112268036
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC112268036 in Genome Data Viewer
Location:
9p11.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (42224436..42233475, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (43774981..43784029, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene 6-pyruvoyltetrahydropterin synthase pseudogene Neighboring gene family with sequence similarity 74 member A7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:43543213-43543713 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:43525693-43526312 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:43525073-43525692 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:43507097-43507903 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:43506290-43507096 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:43505482-43506289 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr9:43496615-43497115 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:43490487-43491080 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:43471861-43472361 Neighboring gene NANOG hESC enhancer GRCh37_chr9:43452586-43453145 Neighboring gene MPRA-validated peak7244 silencer Neighboring gene FKBP prolyl isomerase 4 pseudogene 6 Neighboring gene short chain dehydrogenase/reductase family 42E, member 1 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    42224436..42233475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002956847.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    43774981..43784029 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080422.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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