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Dnm1l dynamin 1-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 114114, updated on 10-Oct-2024

Summary

Official Symbol
Dnm1lprovided by RGD
Official Full Name
dynamin 1-likeprovided by RGD
Primary source
RGD:620416
See related
EnsemblRapid:ENSRNOG00000001813 AllianceGenome:RGD:620416
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
DLP1; Drp1; Dnml1
Summary
Enables BH2 domain binding activity; clathrin binding activity; and identical protein binding activity. Involved in several processes, including mitochondrion organization; positive regulation of cellular component organization; and synaptic vesicle recycling. Located in several cellular components, including Golgi membrane; perinuclear region of cytoplasm; and peroxisome. Is active in presynaptic endocytic zone membrane and synaptic vesicle membrane. Colocalizes with clathrin-coated pit and mitochondrial membrane. Biomarker of chronic kidney disease; dental fluorosis; pulmonary fibrosis; and type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in encephalopathy due to defective mitochondrial and peroxisomal fission 1 and optic atrophy 5. Orthologous to human DNM1L (dynamin 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 422.0), Heart (RPKM 370.9) and 9 other tissues See more
Orthologs
NEW
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Try the new Transcript table

Genomic context

See Dnm1l in Genome Data Viewer
Location:
11q23
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (98084049..98135663)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (84581216..84632382)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (88830968..88882271)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene FYVE, RhoGEF and PH domain containing 4 Neighboring gene ribosomal protein S27a, pseudogene 23 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene tyrosyl-tRNA synthetase 2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables BH2 domain binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 
enables GTP-dependent protein binding ISO
Inferred from Sequence Orthology
more info
 
enables GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 
enables GTPase activity ISO
Inferred from Sequence Orthology
more info
 
enables GTPase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables clathrin binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 
enables microtubule binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
enables protein homodimerization activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables protein serine/threonine kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein-containing complex binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables small GTPase binding ISO
Inferred from Sequence Orthology
more info
 
enables ubiquitin protein ligase binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within calcium ion transport ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to hypoxia IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to lipid IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in endocytosis IBA
Inferred from Biological aspect of Ancestor
more info
 
NOT involved_in endoplasmic reticulum organization ISO
Inferred from Sequence Orthology
more info
 
involved_in heart contraction ISO
Inferred from Sequence Orthology
more info
 
involved_in intracellular distribution of mitochondria IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in intracellular distribution of mitochondria IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in intracellular distribution of mitochondria ISO
Inferred from Sequence Orthology
more info
 
involved_in mitochondrial fission IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within mitochondrial fission ISO
Inferred from Sequence Orthology
more info
 
involved_in mitochondrial fission ISO
Inferred from Sequence Orthology
more info
 
involved_in mitochondrial fission ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in mitochondrial fragmentation involved in apoptotic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in mitochondrial fragmentation involved in apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in mitochondrial fragmentation involved in apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in mitochondrial membrane fission ISO
Inferred from Sequence Orthology
more info
 
involved_in mitochondrion organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within mitochondrion organization ISO
Inferred from Sequence Orthology
more info
 
involved_in mitochondrion organization ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within mitocytosis ISO
Inferred from Sequence Orthology
more info
 
involved_in necroptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of mitochondrial fusion IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in peroxisome fission IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in peroxisome fission ISO
Inferred from Sequence Orthology
more info
 
involved_in peroxisome fission ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of dendritic spine morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of mitochondrial fission IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of mitochondrial fission ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of neutrophil chemotaxis ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of protein secretion ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of synaptic vesicle endocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of synaptic vesicle exocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in protein complex oligomerization ISO
Inferred from Sequence Orthology
more info
 
involved_in protein complex oligomerization ISS
Inferred from Sequence or Structural Similarity
more info
 
acts_upstream_of_or_within protein localization to mitochondrion ISO
Inferred from Sequence Orthology
more info
 
involved_in protein localization to mitochondrion ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of ATP metabolic process ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of mitochondrion organization ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of mitophagy ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of peroxisome organization ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within regulation of ubiquitin protein ligase activity ISO
Inferred from Sequence Orthology
more info
 
involved_in response to endoplasmic reticulum stress IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in response to flavonoid IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to hypobaric hypoxia IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in rhythmic process IEA
Inferred from Electronic Annotation
more info
 
involved_in synaptic vesicle endocytosis IDA
Inferred from Direct Assay
more info
PubMed 
involved_in synaptic vesicle endocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in synaptic vesicle recycling via endosome IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in Golgi membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in brush border ISO
Inferred from Sequence Orthology
more info
 
NOT part_of clathrin coat of trans-Golgi network vesicle IDA
Inferred from Direct Assay
more info
PubMed 
located_in clathrin-coated pit IDA
Inferred from Direct Assay
more info
PubMed 
located_in clathrin-coated pit IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
NOT located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in microtubule IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in microtubule ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrial membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrial outer membrane ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrial outer membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in mitochondrion-derived vesicle ISO
Inferred from Sequence Orthology
more info
 
located_in perinuclear region of cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in peroxisome IDA
Inferred from Direct Assay
more info
PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 
located_in peroxisome ISO
Inferred from Sequence Orthology
more info
 
located_in peroxisome ISS
Inferred from Sequence or Structural Similarity
more info
 
NOT located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in presynaptic endocytic zone membrane IDA
Inferred from Direct Assay
more info
PubMed 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 
located_in secretory vesicle IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in synaptic vesicle membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
dynamin-1-like protein
Names
C-terminal region
N-terminal region
dynamin-like protein 1
dynamin-related protein 1
NP_446107.2
XP_038943816.1
XP_038943817.1
XP_038943818.1
XP_038943819.1
XP_038943820.1
XP_038943821.1
XP_038943822.1
XP_038943823.1
XP_038943824.1
XP_038943825.1
XP_038943826.1
XP_038943827.1
XP_038943828.1
XP_038943829.1
XP_063126304.1
XP_063126305.1
XP_063126306.1
XP_063126307.1
XP_063126308.1
XP_063126309.1
XP_063126310.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053655.3NP_446107.2  dynamin-1-like protein

    See identical proteins and their annotated locations for NP_446107.2

    Status: PROVISIONAL

    Source sequence(s)
    BC085843
    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Related
    ENSRNOP00000078603.2, ENSRNOT00000101129.2
    Conserved Domains (4) summary
    cd08771
    Location:23302
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    COG0699
    Location:88709
    CrfC; Replication fork clamp-binding protein CrfC (dynamin-like GTPase family) [Replication, recombination and repair]
    pfam01031
    Location:227510
    Dynamin_M; Dynamin central region
    pfam02212
    Location:622710
    GED; Dynamin GTPase effector domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    98084049..98135663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039087888.2XP_038943816.1  dynamin-1-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Related
    ENSRNOP00000002478.6, ENSRNOT00000002478.9
    Conserved Domains (3) summary
    cd08771
    Location:23321
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:245529
    Dynamin_M; Dynamin central region
    pfam02212
    Location:667755
    GED; Dynamin GTPase effector domain
  2. XM_039087890.2XP_038943818.1  dynamin-1-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Conserved Domains (4) summary
    cd08771
    Location:23321
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:245529
    Dynamin_M; Dynamin central region
    pfam02212
    Location:656744
    GED; Dynamin GTPase effector domain
    NF033761
    Location:540652
    gliding_GltJ; adventurous gliding motility protein GltJ
  3. XM_039087894.2XP_038943822.1  dynamin-1-like protein isoform X8

    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Conserved Domains (3) summary
    cd08771
    Location:23321
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:245529
    Dynamin_M; Dynamin central region
    pfam02212
    Location:641729
    GED; Dynamin GTPase effector domain
  4. XM_039087897.2XP_038943825.1  dynamin-1-like protein isoform X11

    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Conserved Domains (3) summary
    cd08771
    Location:23321
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:245529
    Dynamin_M; Dynamin central region
    pfam02212
    Location:630718
    GED; Dynamin GTPase effector domain
  5. XM_039087891.2XP_038943819.1  dynamin-1-like protein isoform X4

    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Conserved Domains (3) summary
    cd08771
    Location:23308
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:232516
    Dynamin_M; Dynamin central region
    pfam02212
    Location:654742
    GED; Dynamin GTPase effector domain
  6. XM_063270234.1XP_063126304.1  dynamin-1-like protein isoform X7

  7. XM_039087898.2XP_038943826.1  dynamin-1-like protein isoform X12

    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Conserved Domains (3) summary
    cd08771
    Location:23308
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:232516
    Dynamin_M; Dynamin central region
    pfam02212
    Location:628716
    GED; Dynamin GTPase effector domain
  8. XM_063270235.1XP_063126305.1  dynamin-1-like protein isoform X14

  9. XM_039087889.2XP_038943817.1  dynamin-1-like protein isoform X2

    UniProtKB/Swiss-Prot
    O35303, O35318, O35319, O35320, O35321, O35322, O35323, Q5U2W1, Q792T7, Q9R234, Q9R277
    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Related
    ENSRNOP00000079426.1, ENSRNOT00000097906.2
    Conserved Domains (3) summary
    cd08771
    Location:23315
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:239523
    Dynamin_M; Dynamin central region
    pfam02212
    Location:661749
    GED; Dynamin GTPase effector domain
  10. XM_039087892.2XP_038943820.1  dynamin-1-like protein isoform X5

    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Related
    ENSRNOP00000002482.7, ENSRNOT00000002482.9
    Conserved Domains (4) summary
    cd08771
    Location:23315
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:239523
    Dynamin_M; Dynamin central region
    pfam02212
    Location:650738
    GED; Dynamin GTPase effector domain
    NF033761
    Location:534646
    gliding_GltJ; adventurous gliding motility protein GltJ
  11. XM_039087896.2XP_038943824.1  dynamin-1-like protein isoform X10

    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Conserved Domains (3) summary
    cd08771
    Location:23315
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:239523
    Dynamin_M; Dynamin central region
    pfam02212
    Location:635723
    GED; Dynamin GTPase effector domain
  12. XM_039087899.2XP_038943827.1  dynamin-1-like protein isoform X13

    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Conserved Domains (3) summary
    cd08771
    Location:23315
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:239523
    Dynamin_M; Dynamin central region
    pfam02212
    Location:624712
    GED; Dynamin GTPase effector domain
  13. XM_039087893.2XP_038943821.1  dynamin-1-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Related
    ENSRNOP00000110808.1, ENSRNOT00000172935.1
    Conserved Domains (3) summary
    cd08771
    Location:23302
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:226510
    Dynamin_M; Dynamin central region
    pfam02212
    Location:648736
    GED; Dynamin GTPase effector domain
  14. XM_039087895.2XP_038943823.1  dynamin-1-like protein isoform X9

    UniProtKB/TrEMBL
    A0A8I5ZNF9, A0A8L2Q0G8
    Conserved Domains (4) summary
    cd08771
    Location:23302
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:226510
    Dynamin_M; Dynamin central region
    pfam02212
    Location:637725
    GED; Dynamin GTPase effector domain
    NF033761
    Location:521633
    gliding_GltJ; adventurous gliding motility protein GltJ
  15. XM_039087900.2XP_038943828.1  dynamin-1-like protein isoform X15

    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Related
    ENSRNOP00000002477.7, ENSRNOT00000002477.10
    Conserved Domains (3) summary
    cd08771
    Location:23302
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:226510
    Dynamin_M; Dynamin central region
    pfam02212
    Location:611699
    GED; Dynamin GTPase effector domain
  16. XM_063270236.1XP_063126306.1  dynamin-1-like protein isoform X16

  17. XM_039087901.2XP_038943829.1  dynamin-1-like protein isoform X16

    UniProtKB/TrEMBL
    A0A8I5ZNF9
    Conserved Domains (3) summary
    cd08771
    Location:1153
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:77361
    Dynamin_M; Dynamin central region
    pfam02212
    Location:499587
    GED; Dynamin GTPase effector domain
  18. XM_063270237.1XP_063126307.1  dynamin-1-like protein isoform X17

  19. XM_063270238.1XP_063126308.1  dynamin-1-like protein isoform X18

  20. XM_063270240.1XP_063126310.1  dynamin-1-like protein isoform X19

  21. XM_063270239.1XP_063126309.1  dynamin-1-like protein isoform X19