CSPG4P1Y CSPG4 pseudogene 1 Y-linked [Homo sapiens (human)] - Gene

Summary

Official Symbol: CSPG4P1Yprovided by HGNC
Official Full Name: CSPG4 pseudogene 1 Y-linkedprovided by HGNC
Primary source: HGNC:HGNC:16478
See related: Ensembl:ENSG00000240450 MIM:400034; AllianceGenome:HGNC:16478
Gene type: pseudo
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: CSPG4LY; CSPG4P1; CSPG4PY1; CSPG4LYP1
Summary: There are two copies of this pseudogene within the P1 palindrome on chromosome Y. This record represents the more telomeric copy. [provided by RefSeq, Jul 2008]
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Genomic context

Location:: Yq11.23

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	Y	NC_000024.10 (25482908..25486705)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	Y	NC_060948.1 (26295295..26299092)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	Y	NC_000024.9 (27629055..27632852)

Chromosome Y - NC_000024.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

G66497 (e-PCR)
- UniSTS:230485

G66499 (e-PCR)
- UniSTS:230487

G66500 (e-PCR)
- UniSTS:230488

G66507 (e-PCR)
- UniSTS:230495

G66509 (e-PCR)
- UniSTS:230497

G65863 (e-PCR)
- UniSTS:230529

Other Names

chondroitin sulfate proteoglycan 4 pseudogene 1, Y-linked
chondroitin sulfate proteoglycan 4 pseudogene, Y-linked 1
chondroitin sulfate proteoglycan 4-like, Y-linked pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.