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pea ATP-dependent RNA helicase pea [ Scaptodrosophila lebanonensis ]

Gene ID: 115634811, updated on 23-May-2024

Summary

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Gene symbol
pea
Gene description
ATP-dependent RNA helicase pea
Gene type
protein coding
RefSeq status
MODEL
Organism
Scaptodrosophila lebanonensis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Scaptodrosophila
Orthologs
fruit fly all
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Genomic context

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See pea in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current SlebRS2 (GCF_003285725.1) Unplaced Scaffold NW_022060529.1 (3267378..3271395, complement)

NW_022060529.1Genomic Context describing neighboring genes Neighboring gene low-density lipoprotein receptor-related protein 6 Neighboring gene transmembrane protein 39A Neighboring gene cytochrome c oxidase assembly factor 5 Neighboring gene cysteine--tRNA ligase-like protein, mitochondrial Neighboring gene Reduction in Cnn dots 1 Neighboring gene SH3 and multiple ankyrin repeat domains protein 1 Neighboring gene uncharacterized LOC115621933

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022060529 Unplaced Scaffold Reference SlebRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal complex disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DHX8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scaptodrosophila lebanonensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SlebRS2

Genomic

  1. NW_022060529.1 Reference SlebRS2

    Range
    3267378..3271395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030532723.1 → XP_030388583.1  ATP-dependent RNA helicase DHX8

    UniProtKB/TrEMBL
    A0A6J2UME4
    Conserved Domains (2) summary
    COG1643
    Location:593 → 1241
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd05684
    Location:304 → 382
    S1_DHX8_helicase; The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing ...
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases