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SREK1IP1P2 SREK1IP1 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 115838655, updated on 10-Oct-2023

Summary

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Official Symbol
SREK1IP1P2provided by HGNC
Official Full Name
SREK1IP1 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:54505
See related
Ensembl:ENSG00000271227 AllianceGenome:HGNC:54505
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SREK1IP1P2 in Genome Data Viewer
Location:
6p12.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (52688661..52688998)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (52527445..52527782)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (52553459..52553796)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 5928 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24688 Neighboring gene uncharacterized LOC730101 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:52535127-52535627 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24689 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:52540056-52540616 Neighboring gene transmembrane protein 14A Neighboring gene glutathione S-transferase alpha 8, pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:52577613-52578812 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:52587241-52587355 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17286 Neighboring gene glutathione S-transferase alpha 7, pseudogene Neighboring gene glutathione S-transferase alpha 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_066473.1 

    Range
    101..438
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    52688661..52688998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    52527445..52527782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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