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PUS1 pseudouridine synthase 1 [ Phocoena sinus (vaquita) ]

Gene ID: 116765195, updated on 18-Mar-2024

Summary

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Gene symbol
PUS1
Gene description
pseudouridine synthase 1
See related
Ensembl:ENSPSNG00000011984
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See PUS1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 14 NC_045776.1 (88773287..88789824)

Chromosome 14 - NC_045776.1Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 17 Neighboring gene unc-51 like autophagy activating kinase 1 Neighboring gene E1A binding protein p400 Neighboring gene small nucleolar RNA SNORA49 Neighboring gene DEAD-box helicase 51

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045776.1 Chromosome 14 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA pseudouridine synthase A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045776.1 Reference mPhoSin1.pri

    Range
    88773287..88789824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032654580.1 → XP_032510471.1  tRNA pseudouridine synthase A isoform X7

    Conserved Domains (1) summary
    cd02568
    Location:9 → 249
    PseudoU_synth_PUS1_PUS2; Pseudouridine synthase, PUS1/ PUS2 like

  2. XM_032654581.1 → XP_032510472.1  tRNA pseudouridine synthase A isoform X8

    Conserved Domains (1) summary
    cd02568
    Location:14 → 245
    PseudoU_synth_PUS1_PUS2; Pseudouridine synthase, PUS1/ PUS2 like

  3. XM_032654577.1 → XP_032510468.1  tRNA pseudouridine synthase A isoform X4

    UniProtKB/TrEMBL
    A0A8C9E439
    Related
    ENSPSNP00000016249.1, ENSPSNT00000018333.1
    Conserved Domains (1) summary
    cd02568
    Location:61 → 313
    PseudoU_synth_PUS1_PUS2; Pseudouridine synthase, PUS1/ PUS2 like

  4. XM_032654574.1 → XP_032510465.1  tRNA pseudouridine synthase A isoform X3

    Conserved Domains (1) summary
    cd02568
    Location:61 → 313
    PseudoU_synth_PUS1_PUS2; Pseudouridine synthase, PUS1/ PUS2 like

  5. XM_032654578.1 → XP_032510469.1  tRNA pseudouridine synthase A isoform X5

    Conserved Domains (1) summary
    cd02568
    Location:1 → 207
    PseudoU_synth_PUS1_PUS2; Pseudouridine synthase, PUS1/ PUS2 like

  6. XM_032654572.1 → XP_032510463.1  tRNA pseudouridine synthase A isoform X1

    Conserved Domains (1) summary
    cd02568
    Location:94 → 346
    PseudoU_synth_PUS1_PUS2; Pseudouridine synthase, PUS1/ PUS2 like

  7. XM_032654573.1 → XP_032510464.1  tRNA pseudouridine synthase A isoform X2

    UniProtKB/TrEMBL
    A0A8C9BX22
    Related
    ENSPSNP00000016272.1, ENSPSNT00000018358.1
    Conserved Domains (1) summary
    cd02568
    Location:94 → 346
    PseudoU_synth_PUS1_PUS2; Pseudouridine synthase, PUS1/ PUS2 like

  8. XM_032654576.1 → XP_032510467.1  tRNA pseudouridine synthase A isoform X3

    Conserved Domains (1) summary
    cd02568
    Location:61 → 313
    PseudoU_synth_PUS1_PUS2; Pseudouridine synthase, PUS1/ PUS2 like

  9. XM_032654579.1 → XP_032510470.1  tRNA pseudouridine synthase A isoform X6

    Conserved Domains (1) summary
    cd02568
    Location:16 → 255
    PseudoU_synth_PUS1_PUS2; Pseudouridine synthase, PUS1/ PUS2 like
Nucleotide Protein
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