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SCYGR9 small cysteine and glycine repeat containing 9 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 117134595, updated on 28-Oct-2024

Summary

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Official Symbol
SCYGR9provided by HGNC
Official Full Name
small cysteine and glycine repeat containing 9 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:34219
See related
Ensembl:ENSG00000285843 AllianceGenome:HGNC:34219
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KRTAP28-9; KRTAP28p1
Summary
Predicted to be located in intermediate filament. [provided by Alliance of Genome Resources, Oct 2024]
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Genomic context

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See SCYGR9 in Genome Data Viewer
Location:
2q36.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (227587237..227587515, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (228069873..228070151, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (228451953..228452231, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907994 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:228335785-228336748 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12399 Neighboring gene microRNA 5703 Neighboring gene ArfGAP with FG repeats 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:228451619-228452120 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12401 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_57064 Neighboring gene MPRA-validated peak4071 silencer Neighboring gene small cysteine and glycine repeat containing 2 Neighboring gene small cysteine and glycine repeat containing 10 (gene/pseudogene)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular evolution of the keratin associated protein gene family in mammals, role in the evolution of mammalian hair. Wu DD, et al. BMC Evol Biol, 2008 Aug 23. PMID 18721477, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • keratin associated protein 28 family pseudogene 1
  • keratin associated protein 28-9

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_075677.1 

    Range
    101..379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    227587237..227587515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    228069873..228070151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DSO2.1 GenPept UniProtKB/Swiss-Prot:P0DSO2

Gene LinkOut

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