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BDNF brain derived neurotrophic factor [ Trachemys scripta elegans ]

Gene ID: 117877165, updated on 11-Apr-2024

Summary

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Gene symbol
BDNF
Gene description
brain derived neurotrophic factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachemys scripta elegans (sub-species: elegans)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
Also known as
BDNF1a; BDNF1b; BDNF1c; BDNF2a; BDNF2b; BDNF2c; BDNF2d; BDNF3a; BDNF3b
Orthologs
human mouse all
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Genomic context

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See BDNF in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
100 current CAS_Tse_1.0 (GCF_013100865.1) 4 NC_048301.1 (87868859..87918096, complement)

Chromosome 4 - NC_048301.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing G protein-coupled receptor 4 Neighboring gene lin-7 homolog C, crumbs cell polarity complex component Neighboring gene uncharacterized LOC117876807 Neighboring gene kinesin family member 18A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048301.1 Chromosome 4 Reference CAS_Tse_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of a functionally distinct truncated BDNF mRNA splice variant and protein in Trachemys scripta elegans. Ambigapathy G, et al. PLoS One, 2013. PMID 23825634, Free PMC Article
  2. Cleavage of proBDNF to BDNF by a tolloid-like metalloproteinase is required for acquisition of in vitro eyeblink classical conditioning. Keifer J, et al. J Neurosci, 2009 Nov 25. PMID 19940191, Free PMC Article
  3. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nerve growth factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in memory IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nerve development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nerve growth factor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron projection morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of collateral sprouting IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of peptidyl-serine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
brain-derived neurotrophic factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAS_Tse_1.0 Primary Assembly

Genomic

  1. NC_048301.1 Reference CAS_Tse_1.0 Primary Assembly

    Range
    87868859..87918096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034770002.1 → XP_034625893.1  brain-derived neurotrophic factor isoform X2

    UniProtKB/TrEMBL
    A0A7U0QMF0, S4Z0H1
    Conserved Domains (1) summary
    smart00140
    Location:132 → 239
    NGF; Nerve growth factor (NGF or beta-NGF)

  2. XM_034770000.1 → XP_034625891.1  brain-derived neurotrophic factor isoform X2

    UniProtKB/TrEMBL
    A0A7U0QMF0, S4Z0H1
    Conserved Domains (1) summary
    smart00140
    Location:132 → 239
    NGF; Nerve growth factor (NGF or beta-NGF)

  3. XM_034769999.1 → XP_034625890.1  brain-derived neurotrophic factor isoform X1

    UniProtKB/TrEMBL
    A0A7U0QMF0, F6JXV7
    Conserved Domains (1) summary
    smart00140
    Location:140 → 247
    NGF; Nerve growth factor (NGF or beta-NGF)

  4. XM_034770003.1 → XP_034625894.1  brain-derived neurotrophic factor isoform X2

    UniProtKB/TrEMBL
    A0A7U0QMF0, S4Z0H1
    Conserved Domains (1) summary
    smart00140
    Location:132 → 239
    NGF; Nerve growth factor (NGF or beta-NGF)
Nucleotide Protein
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