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susd1 sushi domain containing 1 [ Scophthalmus maximus (turbot) ]

Gene ID: 118313828, updated on 6-Jun-2024

Summary

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Gene symbol
susd1
Gene description
sushi domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Orthologs
zebrafish all
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Genomic context

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See susd1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 3 NC_061517.1 (22851278..22865206, complement)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 9 NC_049696.1 (4684057..4697948)

Chromosome 3 - NC_061517.1Genomic Context describing neighboring genes Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 4b Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene paralemmin-2 Neighboring gene uncharacterized si:ch211-12e13.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. Pereiro P, et al. PLoS One, 2012. PMID 22629298, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sushi domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061517.1 Reference ASM2237912v1 Primary Assembly

    Range
    22851278..22865206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047330987.1 → XP_047186943.1  sushi domain-containing protein 1 isoform X1

  2. XM_047330988.1 → XP_047186944.1  sushi domain-containing protein 1 isoform X3

  3. XM_047330992.1 → XP_047186948.1  sushi domain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A8D2ZD15

  4. XM_035639749.2 → XP_035495642.2  sushi domain-containing protein 1 isoform X2

  5. XM_047330989.1 → XP_047186945.1  sushi domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8D2ZD15

  6. XM_047330991.1 → XP_047186947.1  sushi domain-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8D2ZD15

  7. XM_047330990.1 → XP_047186946.1  sushi domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8D2ZD15

  8. XM_047330994.1 → XP_047186950.1  sushi domain-containing protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A8D2ZCY8

  9. XM_047330993.1 → XP_047186949.1  sushi domain-containing protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A8D2ZD15
Nucleotide Protein Strain
Heading Accession and Version

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