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ddx49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [ Scophthalmus maximus (turbot) ]

Gene ID: 118318173, updated on 6-Jun-2024

Summary

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Gene symbol
ddx49
Gene description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
See related
EnsemblRapid:ENSSMAG00025007144
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 13
Exon count:
13
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 13 NC_061527.1 (8106056..8113740)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 12 NC_049699.1 (8155395..8162308)

Chromosome 13 - NC_061527.1Genomic Context describing neighboring genes Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 Neighboring gene homer scaffold protein 3b Neighboring gene regulator of nonsense transcripts 1 Neighboring gene pyroglutamyl-peptidase 1-like Neighboring gene LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. Pereiro P, et al. PLoS One, 2012. PMID 22629298, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX49

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061527.1 Reference ASM2237912v1 Primary Assembly

    Range
    8106056..8113740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035647558.2 → XP_035503451.2  probable ATP-dependent RNA helicase DDX49

    UniProtKB/TrEMBL
    A0A8D3CKP5
    Related
    ENSSMAP00025023022.1, ENSSMAT00025024038.1
Nucleotide Protein Strain
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