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LOC119881611 HLA class II histocompatibility antigen, DP beta 1 chain-like [ Canis lupus familiaris (dog) ]

Gene ID: 119881611, updated on 5-Jun-2021

Summary

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Gene symbol
LOC119881611
Gene description
HLA class II histocompatibility antigen, DP beta 1 chain-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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See LOC119881611 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (2910929..2944470)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (2650743..2694892)

Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene major histocompatibility complex, class II, DM alpha Neighboring gene bromodomain containing 2 Neighboring gene HLA class II histocompatibility antigen, DO alpha chain-like Neighboring gene uncharacterized LOC102152980 Neighboring gene small Cajal body-specific RNA 20 Neighboring gene 60S ribosomal protein L11-like Neighboring gene collagen type XI alpha 2 chain Neighboring gene retinoid X receptor beta Neighboring gene solute carrier family 39 member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DP beta 1 chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051816.1 Reference ROS_Cfam_1.0

    Range
    2910929..2944470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038682839.1 → XP_038538767.1  LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DP beta 1 chain-like isoform X1

    Conserved Domains (2) summary
    cd21003
    Location:142 → 239
    IgC1_MHC_II_beta_HLA-DP; Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain of histocompatibility antigen (HLA) DP; member of the C1-set of Ig superfamily (IgSF) domains
    cl03042
    Location:83 → 129
    MHC_II_beta; Class II histocompatibility antigen, beta domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    2650743..2694892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038677255.1 → XP_038533183.1  LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DP beta 1 chain-like isoform X2

    Conserved Domains (2) summary
    cd21003
    Location:128 → 225
    IgC1_MHC_II_beta_HLA-DP; Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain of histocompatibility antigen (HLA) DP; member of the C1-set of Ig superfamily (IgSF) domains
    cl03042
    Location:69 → 115
    MHC_II_beta; Class II histocompatibility antigen, beta domain
Nucleotide Protein
Heading Accession and Version

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