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lamb1a laminin, beta 1a [ Pimephales promelas (fathead minnow) ]

Gene ID: 120495590, updated on 21-Mar-2024

Summary

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Gene symbol
lamb1a
Gene description
laminin, beta 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
human zebrafish all
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Genomic context

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See lamb1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121477.1 (5793056..5834059)

NW_024121477.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120459103 Neighboring gene acyl-CoA thioesterase 19 Neighboring gene laminin, beta 4 Neighboring gene immunoglobulin superfamily containing leucine-rich repeat 2 Neighboring gene signaling receptor and transporter of retinol STRA6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121477 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in basement membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of laminin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit beta-1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121477.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    5793056..5834059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039695225.1 → XP_039551159.1  laminin subunit beta-1a

    Conserved Domains (5) summary
    smart00136
    Location:26 → 266
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:769 → 814
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    COG1196
    Location:1440 → 1774
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:394 → 452
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cl14880
    Location:552 → 612
    CBM6-CBM35-CBM36_like; Carbohydrate Binding Module 6 (CBM6) and CBM35_like superfamily
Nucleotide Protein
Heading Accession and Version

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