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Bfsp1 beaded filament structural protein 1, in lens-CP94 [ Mus musculus (house mouse) ]

Gene ID: 12075, updated on 9-Dec-2024

Summary

Official Symbol
Bfsp1provided by MGI
Official Full Name
beaded filament structural protein 1, in lens-CP94provided by MGI
Primary source
MGI:MGI:101770
See related
Ensembl:ENSMUSG00000027420 AllianceGenome:MGI:101770
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CP95
Summary
A structural constituent of eye lens. Involved in intermediate filament organization. Acts upstream of or within cell maturation and lens fiber cell development. Located in cytoplasm; intermediate filament; and plasma membrane. Is expressed in several structures, including eye and male reproductive gland or organ. Human ortholog(s) of this gene implicated in cataract 33. Orthologous to human BFSP1 (beaded filament structural protein 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Broad expression in colon adult (RPKM 1.7), large intestine adult (RPKM 1.2) and 22 other tissues See more
Orthologs
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Genomic context

See Bfsp1 in Genome Data Viewer
Location:
2 G1; 2 70.89 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (143668448..143757320, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (143826528..143915219, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene proprotein convertase subtilisin/kexin type 2 Neighboring gene proprotein convertase subtilisin/kexin type 2, opposite strand 2 Neighboring gene predicted gene, 52527 Neighboring gene STARR-positive B cell enhancer ABC_E4506 Neighboring gene ribosomal protein S13, pseudogene 6 Neighboring gene predicted gene, 33648 Neighboring gene STARR-seq mESC enhancer starr_05893 Neighboring gene predicted gene 11686 Neighboring gene STARR-positive B cell enhancer ABC_E9072 Neighboring gene STARR-seq mESC enhancer starr_05895 Neighboring gene destrin Neighboring gene predicted gene, 33804 Neighboring gene predicted gene, 54119 Neighboring gene ribosome binding protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (3)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables structural constituent of eye lens IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of eye lens IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell maturation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in intermediate filament organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in lens fiber cell development IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within lens fiber cell development IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in cell cortex IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in intermediate filament IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in intermediate filament IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
filensin
Names
beaded filament structural protein in lens-CP94
lens fiber cell beaded-filament structural protein CP 95

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001291061.2NP_001277990.1  filensin isoform a

    See identical proteins and their annotated locations for NP_001277990.1

    Status: VALIDATED

    Source sequence(s)
    AL807801
    Consensus CDS
    CCDS71154.1
    UniProtKB/Swiss-Prot
    A2AMT1, O54770, Q3UPV0, Q6PFF8, Q8BKB1, Q9QWM4
    UniProtKB/TrEMBL
    O35656
    Related
    ENSMUSP00000096899.4, ENSMUST00000099296.4
    Conserved Domains (1) summary
    pfam00038
    Location:37317
    Filament; Intermediate filament protein
  2. NM_001416908.1NP_001403837.1  filensin isoform c

    Status: VALIDATED

    Source sequence(s)
    AL807801
  3. NM_009751.3NP_033881.2  filensin isoform b

    See identical proteins and their annotated locations for NP_033881.2

    Status: VALIDATED

    Source sequence(s)
    AL807801
    Consensus CDS
    CCDS16811.1
    UniProtKB/TrEMBL
    O35656
    Related
    ENSMUSP00000028907.8, ENSMUST00000028907.14
    Conserved Domains (2) summary
    pfam00038
    Location:37311
    Filament; Intermediate filament protein
    pfam16888
    Location:206279
    DUF5082; Domain of unknown function (DUF5082)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    143668448..143757320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030246932.2XP_030102792.1  filensin isoform X2

    Conserved Domains (1) summary
    COG1196
    Location:2179
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
  2. XM_011239261.4XP_011237563.1  filensin isoform X1

    See identical proteins and their annotated locations for XP_011237563.1

    Conserved Domains (1) summary
    COG1196
    Location:2185
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
  3. XM_011239265.2XP_011237567.1  filensin isoform X3

    See identical proteins and their annotated locations for XP_011237567.1

    Conserved Domains (1) summary
    PRK09039
    Location:8155
    PRK09039; peptidoglycan -binding protein
  4. XM_011239264.4XP_011237566.1  filensin isoform X3

    See identical proteins and their annotated locations for XP_011237566.1

    Conserved Domains (1) summary
    PRK09039
    Location:8155
    PRK09039; peptidoglycan -binding protein
  5. XM_011239266.4XP_011237568.1  filensin isoform X3

    See identical proteins and their annotated locations for XP_011237568.1

    Conserved Domains (1) summary
    PRK09039
    Location:8155
    PRK09039; peptidoglycan -binding protein