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LOC121268908 putative RING-H2 finger protein ATL21B [ Juglans microcarpa x Juglans regia ]

Gene ID: 121268908, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121268908
Gene description
putative RING-H2 finger protein ATL21B
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans microcarpa x Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC121268908 in Genome Data Viewer
Location:
chromosome: 6D
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Jm3101_v1.0 (GCF_004785595.1) 6D NC_054604.1 (29580820..29583954)

Chromosome 6D - NC_054604.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121235518 Neighboring gene putative E3 ubiquitin-protein ligase UBR7 Neighboring gene mitochondrial inner membrane protein OXA1-like Neighboring gene uncharacterized LOC121235075 Neighboring gene long chain acyl-CoA synthetase 4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054604.1 Chromosome 6D Reference Jm3101_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polysaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative RING-H2 finger protein ATL21A; putative RING-H2 finger protein ATL21B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans microcarpa x Juglans regia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Jm3101_v1.0

Genomic

  1. NC_054604.1 Reference Jm3101_v1.0

    Range
    29580820..29583954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041173178.1 → XP_041029112.1  putative RING-H2 finger protein ATL21A isoform X2

    Conserved Domains (2) summary
    COG5540
    Location:228 → 325
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cd16454
    Location:282 → 325
    RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family

  2. XM_041173176.1 → XP_041029110.1  putative RING-H2 finger protein ATL21B isoform X1

    Conserved Domains (2) summary
    COG5540
    Location:261 → 358
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cd16454
    Location:315 → 358
    RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
Nucleotide Protein
Heading Accession and Version