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XNDC1N-ZNF705EP-ALG1L9P XNDC1N-ZNF705EP-ALG1L9P readthrough [ Homo sapiens (human) ]

Gene ID: 122319435, updated on 9-Dec-2024

Summary

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Official Symbol
XNDC1N-ZNF705EP-ALG1L9Pprovided by HGNC
Official Full Name
XNDC1N-ZNF705EP-ALG1L9P readthroughprovided by HGNC
Primary source
HGNC:HGNC:55871
See related
Ensembl:ENSG00000289716 AllianceGenome:HGNC:55871
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents naturally occurring readthrough transcription between the neighboring XNDC1N (XRCC1 N-terminal domain containing 1-like), ZNF705P (zinc finger protein 705, pseudogene) and ALG1L9P (ALG1 like 9, pseudogene) genes on chromosome 11q13.4. These readthrough transcripts are candidates for nonsense-mediated mRNA decay (NMD), and are unlikely to produce a protein product. [provided by RefSeq, Aug 2021]
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Genomic context

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See XNDC1N-ZNF705EP-ALG1L9P in Genome Data Viewer
Location:
11q13.4
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (71804981..71928594, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (71731902..71855483, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (71516027..71639640, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:71445659-71446532 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 8 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3711 Neighboring gene family with sequence similarity 86, member C Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3712 Neighboring gene ALG1 like 9, pseudogene Neighboring gene zinc finger protein 705E, pseudogene Neighboring gene defensin beta 108B Neighboring gene RNA, 5S ribosomal pseudogene 342 Neighboring gene MPRA-validated peak1338 silencer Neighboring gene defensin beta 130C (pseudogene) Neighboring gene XRCC1 N-terminal domain containing 1, N-terminal like Neighboring gene defensin beta 131B Neighboring gene olfactory receptor family 7 subfamily E member 128 pseudogene Neighboring gene olfactory receptor family 7 subfamily E member 126 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5171 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71660091-71661028 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71661029-71661964 Neighboring gene ring finger protein 121 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5172 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5173 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5174 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5175 Neighboring gene interleukin 18 binding protein Neighboring gene nuclear mitotic apparatus protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_172893.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP002490, AP002495
    Related
    ENST00000696863.1

  2. NR_172894.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP002490, AP002495

  3. NR_172895.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP002490, AP002495

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    71804981..71928594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    71731902..71855483 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials