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TRIM5 tripartite motif containing 5 [ Lemur catta (Ring-tailed lemur) ]

Gene ID: 123642337, updated on 22-Mar-2024

Summary

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Gene symbol
TRIM5
Gene description
tripartite motif containing 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Lemur catta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Lemuridae; Lemur
Orthologs
human all
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Genomic context

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See TRIM5 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
100 current mLemCat1.pri (GCF_020740605.2) 7 NC_059134.1 (61990027..62005364, complement)

Chromosome 7 - NC_059134.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 52B6 Neighboring gene tripartite motif-containing protein 34-like Neighboring gene tripartite motif containing 6 Neighboring gene uncharacterized LOC123642341 Neighboring gene olfactory receptor 52H1-like Neighboring gene olfactory receptor 52D1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059134.1 Chromosome 7 Reference mLemCat1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unique spectrum of activity of prosimian TRIM5alpha against exogenous and endogenous retroviruses. Rahm N, et al. J Virol, 2011 May. PMID 21345948, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lemur catta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLemCat1.pri Primary Assembly

Genomic

  1. NC_059134.1 Reference mLemCat1.pri Primary Assembly

    Range
    61990027..62005364 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045557336.1 → XP_045413292.1  tripartite motif-containing protein 5

    UniProtKB/TrEMBL
    F5A681
    Conserved Domains (4) summary
    smart00935
    Location:133 → 221
    OmpH; Outer membrane protein (OmpH-like)
    cd15822
    Location:290 → 520
    SPRY_PRY_TRIM5; PRY/SPRY domain in tripartite motif-binding protein 5 (TRIM5), also known as RING finger protein 88 (RNF88)
    cd16591
    Location:12 → 61
    RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
    cd19761
    Location:95 → 134
    Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins
Nucleotide Protein
Heading Accession and Version

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