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LOC127269735 H3K4me1 hESC enhancer GRCh37_chr1:92149313-92149816 [ Homo sapiens (human) ]

Gene ID: 127269735, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127269735
Gene description
H3K4me1 hESC enhancer GRCh37_chr1:92149313-92149816
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127269735 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (91683756..91684259)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (91528344..91528847)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (92149313..92149816)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:92076797-92077298 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:92077299-92077798 Neighboring gene ribosomal protein L39 pseudogene 13 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:92110412-92110978 Neighboring gene heat shock protein 90 beta family member 3, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1306 Neighboring gene transforming growth factor beta receptor 3 Neighboring gene Sharpr-MPRA regulatory region 4673 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:92202312-92203511 Neighboring gene Sharpr-MPRA regulatory region 7299 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:92218493-92218993 Neighboring gene uncharacterized LOC124904659 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:92251462-92251665 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1307 Neighboring gene Sharpr-MPRA regulatory region 12731 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1308 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1309 Neighboring gene RNA, 7SL, cytoplasmic 653, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_091595.1 

    Range
    101..604
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    91683756..91684259
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    91528344..91528847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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